![]() ![]() msas/ - A directory containing the files describing the various genetic tool hits that were used to construct the input MSA.timings.json – A JSON format text file containing the times taken to run each section of the AlphaFold pipeline. ![]() ranking_debug.json – A JSON format text file containing the pLDDT values used to perform the model ranking, and a mapping back to the original model names. ![]() To rank model confidence, we use predicted LDDT (pLDDT), see Jumper et al. Here ranked_0.pdb should contain the prediction with the highest confidence, and ranked_4.pdb the prediction with the lowest confidence.
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